Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 61
Filtrar
1.
Water Sci Technol ; 89(9): 2523-2537, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38747965

RESUMO

Miscanthus sacchariflorus is previously demonstrated to be a potential candidate for remediation of cadmium (Cd) pollution. To explore its resistance strategy to Cd, a hydroponic experiment was conducted to determine the variations of photosynthetic activity in leaves and physiological response in roots of this plant. Results showed that the root of M. sacchariflorus was the primary location for Cd accumulation. The bioconcentration factor in the roots and rhizomes was >1, and the translocation factor from underground to aboveground was <1. Throughout the experimental period, treatment with 0.06 mM Cd2+ did not significantly alter the contents of chlorophyll a, chlorophyll b, or carotenoid. By contrast, treatment with 0.15 and 0.30 mM Cd2+ decreased the contents of chlorophyll a, chlorophyll b, and carotenoid; caused the deformation of the chlorophyll fluorescence transient curve; reduced the photochemical efficiency of photosystem II; and increased the contents of non-protein thiols, total flavone, and total phenol. These results indicate that M. sacchariflorus has good adaptability to 0.06 mM Cd2+. Moreover, the accumulation of the non-protein thiols, total flavone, and total phenol in roots may promote the chelation of Cd2+, thus alleviating Cd toxicity. This study provides theoretical support for using M. sacchariflorus to remediate Cd-polluted wetlands.


Assuntos
Cádmio , Fotossíntese , Poaceae , Compostos de Sulfidrila , Cádmio/toxicidade , Cádmio/metabolismo , Fotossíntese/efeitos dos fármacos , Poaceae/metabolismo , Poaceae/efeitos dos fármacos , Compostos de Sulfidrila/metabolismo , Clorofila/metabolismo , Raízes de Plantas/metabolismo , Raízes de Plantas/efeitos dos fármacos , Biodegradação Ambiental
2.
Plant Cell Rep ; 43(4): 103, 2024 Mar 19.
Artigo em Inglês | MEDLINE | ID: mdl-38502356

RESUMO

KEY MESSAGE: Methylglyoxal and glyoxalase function a significant role in plant response to heavy metal stress. We update and discuss the most recent developments of methylglyoxal and glyoxalase in regulating plant response to heavy metal stress. Methylglyoxal (MG), a by-product of several metabolic processes, is created by both enzymatic and non-enzymatic mechanisms. It plays an important role in plant growth and development, signal transduction, and response to heavy metal stress (HMS). Changes in MG content and glyoxalase (GLY) activity under HMS imply that they may be potential biomarkers of plant stress resistance. In this review, we summarize recent advances in research on the mechanisms of MG and GLY in the regulation of plant responses to HMS. It has been discovered that appropriate concentrations of MG assist plants in maintaining a balance between growth and development and survival defense, therefore shielding them from heavy metal harm. MG and GLY regulate plant physiological processes by remodeling cellular redox homeostasis, regulating stomatal movement, and crosstalking with other signaling molecules (including abscisic acid, gibberellic acid, jasmonic acid, cytokinin, salicylic acid, melatonin, ethylene, hydrogen sulfide, and nitric oxide). We also discuss the involvement of MG and GLY in the regulation of plant responses to HMS at the transcriptional, translational, and metabolic levels. Lastly, considering the current state of research, we present a perspective on the future direction of MG research to elucidate the MG anti-stress mechanism and offer a theoretical foundation and useful advice for the remediation of heavy metal-contaminated environments in the future.


Assuntos
Lactoilglutationa Liase , Metais Pesados , Aldeído Pirúvico/metabolismo , Plantas/metabolismo , Lactoilglutationa Liase/metabolismo , Metais Pesados/toxicidade , Metais Pesados/metabolismo , Desenvolvimento Vegetal , Estresse Fisiológico/fisiologia
3.
Artigo em Inglês | MEDLINE | ID: mdl-38060353

RESUMO

The De Bruijn graph (DBG) has been widely used in the algorithms for indexing or organizing read and reference sequences in bioinformatics. However, a DBG model that can locate each node, edge and path on sequence has not been proposed so far. Recently, DBG has been used for representing reference sequences in read mapping tasks. In this process, it is not a one-to-one correspondence between the paths of DBG and the substrings of reference sequence. This results in the false path on DBG, which means no substrings of reference producing the path. Moreover, if a candidate path of a read is true, we need to locate it and verify the candidate on sequence. To solve these problems, we proposed a DBG model, called MiniDBG, which stores the position lists of a minimal set of edges. With the position lists, MiniDBG can locate any node, edge and path efficiently. We also proposed algorithms for generating MiniDBG based on an original DBG and algorithms for locating edges or paths on sequence. We designed and ran experiments on real datasets for comparing them with BWT-based and position list-based methods. The experimental results show that MiniDBG can locate the edges and paths efficiently with lower memory costs.


Assuntos
Algoritmos , Biologia Computacional , Análise de Sequência de DNA/métodos , Biologia Computacional/métodos , Software , Sequenciamento de Nucleotídeos em Larga Escala/métodos
4.
Water Res ; 247: 120808, 2023 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-37924684

RESUMO

Dissolved inorganic carbon (DIC) represents a major global carbon pool and the flux from rivers to oceans has been observed to be increasing. The effect of weathering with respect to increasing DIC has been widely studied in recent decades; however, the influence of dissolved organic matter (DOM) on increasing DIC in large rivers remains unclear. This study employed stable carbon isotopes and Fourier transform ion cyclotron mass spectrometry (FT-ICR MS) to investigate the effect of the molecular composition of DOM on the DIC in the Yangtze River. The results showed that organic matter is an important source of DIC in the Yangtze River, accounting for 40.0 ± 12.1 % and 32.0 ± 7.2 % of DIC in wet and dry seasons, respectively, and increased along the river by approximately three times. Nitrogen (N)-containing DOM, an important composition in DOM with a percentage of ∼40 %, showed superior oxidation state than non N-containing DOM, suggesting that the presence of N could improve the degradable potential of DOM. Positive relationship between organic sourced DIC (DICOC) and N-containing DOM formulae indicated that N-containing DOM is crucial to facilitate the mineralization of DOM to DICOC. N-containg molecular formular with low H/C and O/C ratio were positively correlated with DICOC further verified these energy-rich and biolabile compounds are preferentially decomposed by bacteria to produce DIC. N-containing components significantly accelerated the degradation of DOM to DICOC, which is important for understanding the CO2 emission and carbon cycling in large rivers.


Assuntos
Matéria Orgânica Dissolvida , Rios , Rios/química , Isótopos de Carbono , Espectrometria de Massas , China , Nitrogênio , Carbono
5.
Food Chem ; 428: 136780, 2023 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-37413833

RESUMO

Foodborne illness caused by Staphylococcus aureus (S. aureus) has posed a significant threat to human health. Herein, an integrated multifunctional nanoplatform was developed for fluorescence detection and inactivation of S. aureus based on cascade signal amplification coupled with single strand DNA-template copper nanoparticles (ssDNA-Cu NPs). Benefiting from reasonable design, one-step cascade signal amplification was achieved through strand displacement amplification combined with rolling circle amplification, followed by in-situ generation of copper nanoparticles. S. aureus detection could be performed through naked eye observation and microplate reader measurement of the red fluorescence signal. The multifunctional nanoplatform had satisfactory specificity and sensitivity, achieving 5.2 CFU mL-1 detection limit and successful detection of 7.3 CFU of S. aureus in spiked egg after < 5 h of enrichment. Moreover, ssDNA-Cu NPs could eliminate S. aureus to avoid secondary bacterial contamination without further treatment. Therefore, this multifunctional nanoplatform has potential application in food safety dtection.


Assuntos
Técnicas Biossensoriais , Staphylococcus aureus , Humanos , Staphylococcus aureus/genética , Cobre , Técnicas de Amplificação de Ácido Nucleico , DNA de Cadeia Simples , Limite de Detecção
6.
Plant Physiol Biochem ; 201: 107888, 2023 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-37442048

RESUMO

Identifying the physiological response and tolerance mechanism of wetland plants to heavy metal exposure can provide theoretical guidance for an early warning for acute metal pollution and metal-contaminated water phytoremediation. A hydroponic experiment was employed to investigate variations in the antioxidant enzyme activity, chlorophyll content, and photosynthesis in leaves of Monochoria korsakowii under 0.12 mM cadmium ion (Cd2+) acute (4 d) and chronic (21 d) exposure. Transcriptome and metabolome were analyzed to elucidate the underlying defensive strategies. The acute/chronic Cd2+ exposure decreased chlorophyll a and b contents, and disturbed photosynthesis in the leaves. The acute Cd2+ exposure increased catalase activity by 36.42%, while the chronic Cd2+ exposure markedly increased ascorbate peroxidase, superoxide dismutase, and glutathione peroxidase activities in the leaves. A total of 2 685 differentially expressed genes (DEGs) in the leaves were identified with the plants exposed to the acute/chronic Cd2+ contamination. In the acute Cd2+ exposure treatment, DEGs were preferentially enriched in the plant hormone transduction pathway, followed by phenylrpopanoid biosynthesis. However, the chronic Cd2+ exposure induced DEGs enriched in the biosynthesis of secondary metabolites pathway as priority. With acute/chronic Cd2+ exposure, a total of 157 and 227 differentially expressed metabolites were identified in the leaves. Conjoint transcriptome and metabolome analysis indicated the plant hormone signal transduction pathway and biosynthesis of secondary metabolites was preferentially activated by the acute and chronic Cd2+ exposure, respectively. The phenylpropanoid pathway functioned as a chemical defense, and the positive role of deoxyxylulose phosphate pathway in leaves against acute/chronic Cd2+ exposure was impaired.


Assuntos
Cádmio , Transcriptoma , Cádmio/toxicidade , Cádmio/metabolismo , Clorofila A/metabolismo , Reguladores de Crescimento de Plantas/metabolismo , Antioxidantes/metabolismo , Raízes de Plantas/metabolismo , Folhas de Planta/metabolismo
7.
Environ Sci Technol ; 57(23): 8598-8609, 2023 06 13.
Artigo em Inglês | MEDLINE | ID: mdl-37249317

RESUMO

Combustion-driven particulate black carbon (PBC) is a crucial slow-cycling pool in the organic carbon flux from rivers to oceans. Since the refractoriness of PBC stems from the association of non-homologous char and soot, the composition and source of char and soot must be considered when investigating riverine PBC. Samples along the Yangtze River continuum during different hydrological periods were collected in this study to investigate the association and asynchronous combustion drive of char and soot in PBC. The results revealed that PBC in the Yangtze River, with higher refractory nature, accounts for 13.73 ± 6.89% of particulate organic carbon, and soot occupies 37.53 ± 11.00% of PBC. The preponderant contribution of fossil fuel combustion to soot (92.57 ± 3.20%) compared to char (27.55 ± 5.92%), suggested that fossil fuel combustion is a crucial driver for PBC with high soot percentage. Redundancy analysis and structural equation modeling confirmed that the fossil fuel energy used by anthropogenic activities promoting soot is the crucial reason for high-refractory PBC. We estimated that the Yangtze River transported 0.15-0.23 Tg of soot and 0.15-0.25 Tg of char to the ocean annually, and the export of large higher refractory PBC to the ocean can form a long-term sink and prolong the residence time of terrigenous carbon.


Assuntos
Rios , Fuligem , Fuligem/análise , Efeitos Antropogênicos , Monitoramento Ambiental/métodos , Combustíveis Fósseis/análise , Poeira/análise , Carbono , China
8.
Water Res ; 234: 119812, 2023 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-36881953

RESUMO

The Yangtze River, the largest river in Asia, plays a crucial role in linking continental and oceanic ecosystems. However, the impact of natural and anthropogenic disturbances on composition and transformation of dissolved organic matter (DOM) during long-distance transport and seasonal cycle is not fully understood. By using a combination of elemental, isotopic and optical techniques, as well as Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS), we investigated DOM abundance and composition along the whole mainstream at highly spatial resolution in the dry and early wet seasons. Our findings showed that the concentration and flux of dissolved organic carbon (DOC) in the Yangtze River was much lower compared with other worldwide larger rivers. The distribution of δ13CDOC and higher abundance of humic-like fluorescent component and highly unsaturated and phenolics (HUPs) compound reflected a prominent contribution of allochthonous DOM. Further optical and molecular analysis revealed humic-like fluorescent components were coupled with CHO molecules and HUPs compound with higher aromatic, unsaturated, molecular weight and stable characteristics between upstream and midstream reaches. With increasing agricultural and urban land downstream, there were more heteroatomic formulae and labile aliphatic and protein-like compounds which were derived from human activities and in situ primary production. Meanwhile, DOM gradually accumulates with slow water flow and additional autochthonous organics. Weaker solar radiation and water dilution during the dry/cold season favours highly aromatic, unsaturated and oxygenated DOM compositions. Conversely, higher discharge during the wet/warm season diluted the terrestrial DOM, but warm temperatures could promote phytoplankton growth that releases labile aliphatic and protein-like DOM. Besides, chemical sulfurization, hydrogenation and oxygenation were found during molecular cycling processes. Our research emphasizes the active response of riverine DOM to natural and anthropogenic controls, and provides a valuable preliminary background to better understand the biogeochemical cycling of DOM in a larger river.


Assuntos
Matéria Orgânica Dissolvida , Ecossistema , Humanos , Agricultura , Substâncias Húmicas/análise , Rios/química
10.
Insects ; 13(8)2022 Aug 09.
Artigo em Inglês | MEDLINE | ID: mdl-36005341

RESUMO

Hierodulinae is a species-rich mantid subfamily, with some species bearing a notable leaf-like pronotum. However, the evolutionary pattern and taxonomic significance of the leaf-like pronotum are largely unknown. Here, we present a phylogenomic analysis of the Hierodulinae genera Rhombodera Burmeister, 1838, and Hierodula Burmeister, 1838 based on mitochondrial genomes. We also describe a new species, namely Rhombodera hyalina sp. nov. from Guangxi, China. Our phylogenetic result, together with the evidence from male genitalia, suggests the division of the Oriental Hierodula and Rhombodera complex into three clades. We find a complex pattern on the evolution of the leaf-like pronotum, which is present in at least five lineages, respectively, of the above three clades.

11.
Stem Cell Res Ther ; 13(1): 224, 2022 06 03.
Artigo em Inglês | MEDLINE | ID: mdl-35659360

RESUMO

BACKGROUND: Liver fibrosis is an outcome of restoring process in chronic liver injury. Human amniotic mesenchymal stem cells (hAMSCs) derived from amniotic membrane have multilineage differentiation, immunosuppressive, and anti-inflammatory potential which makes them suitable for treating liver fibrosis. This study aimed to explore the effect and mechanism of hAMSCs on liver fibrosis. METHODS: hAMSCs were transplanted into carbon tetrachloride (CCl4)-induced liver fibrosis mice via tail vein, and the effects of hAMSCs on hepatic fibrosis were assessed. The effects of hAMSCs and hAMSCs conditional medium (CM) on the activation of hepatic stellate cells (HSCs) were investigated in vivo and in vitro. Antibody array assay was used to identify the cytokines secreted by hAMSCs that may inhibit the activation of HSCs. Finally, the underlying mechanisms were explored by assessing IGF-1R/PI3K/AKT and GSK3ß/ß-catenin signaling pathways in the activated HSCs (LX-2) with hAMSCs and hAMSCs transfected with corresponding siRNAs. RESULTS: Our results showed that hAMSCs possessed the characterizations of mesenchymal stem cells. hAMSCs significantly reduced liver fibrosis and improved liver function in mice by inhibiting HSCs activation in vivo. Both hAMSCs and hAMSC-CM remarkably inhibited the collagen deposition and activation of LX-2 cells in vitro. Antibody array assay showed that insulin-like growth factor binding protein-3 (IGFBP-3), Dickkopf-3 (DKK-3), and Dickkopf-1 (DKK-1) were highly expressed in the co-culture group and hAMSC-CM group compared with LX-2 group. Western blot assay demonstrated that IGFBP-3, DKK-3, and DKK-1 derived from hAMSCs inhibit LX-2 cell activation through blocking canonical Wnt signaling pathway. CONCLUSIONS: Our results demonstrated that IGFBP-3, Dkk3, and DKK-1 secreted by hAMSCs attenuated liver fibrosis in mice through inhibiting HSCs activation via depression of Wnt/ß-catenin signaling pathway, suggesting that hAMSCs or hAMSC-CM provides an alternative therapeutic approach for the treatment of liver fibrosis.


Assuntos
Células-Tronco Mesenquimais , Via de Sinalização Wnt , Âmnio , Animais , Células Estreladas do Fígado/metabolismo , Humanos , Proteína 3 de Ligação a Fator de Crescimento Semelhante à Insulina/metabolismo , Cirrose Hepática/induzido quimicamente , Cirrose Hepática/terapia , Células-Tronco Mesenquimais/metabolismo , Camundongos , Fosfatidilinositol 3-Quinases/metabolismo
12.
Front Cell Neurosci ; 16: 771156, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35221919

RESUMO

Background: The pathophysiological mechanisms underlying postoperative cognitive dysfunction (POCD) remain unclear over the years. Neuroinflammation caused by surgery has been recognized as an important element in the development of POCD. Many studies also suggest that the vagus nerve plays an important role in transmitting peripheral injury signals to the central nervous system (CNS) and the resultant neuroinflammation. Previously, we have demonstrated that brain mast cells (BMCs), as the "first responders", play a vital role in neuroinflammation and POCD. However, how the vagus nerve communicates with BMCs in POCD has not yet been clarified. Methods: In the current study, we highlighted the role of the vagus nerve as a conduction highway in surgery-induced neuroinflammation for the first time. In our model, we tested if mice underwent unilateral cervical vagotomy (VGX) had less neuroinflammation compared to the shams after laparotomy (LP) at an early stage. To further investigate the roles of mast cells and glutamate in the process, we employed KitW-sh mice and primary bone marrow-derived MCs to verify the glutamate-NR2B axis on MCs once again. Results: Our results demonstrated that there were higher levels of glutamate and BMCs activation as early as 4 h after LP. Meanwhile, vagotomy could partially block the increases and reduce neuroinflammation caused by peripheral inflammation during the acute phase. Excitingly, inhibition of NR2B receptor and knockout of mast cells can attenuateneuroinflammation induced by glutamate. Conclusion: Taken together, our findings indicate that the vagus is a high-speed pathway in the transmission of peripheral inflammation to the CNS. Activation of BMCs triggered a neuroinflammatory cascade. Inhibition of NR2B receptor on BMCs can reduce glutamate-induced BMCs activation, neuroinflammation, and memory impairment, suggesting a novel treatment strategy for POCD.

13.
Ecotoxicol Environ Saf ; 232: 113236, 2022 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-35093809

RESUMO

Pontederia cordata is previously demonstrated a cadmium (Cd) tolerant plant, and also a candidate for the phytoremediation of heavy-metal-contaminated wetlands. A hydroponic experiment was used to investigate variations in photosynthetic gas exchange parameters, antioxidative activities, chlorophyll and secondary metabolite contents, and transcriptome in leaves of the plant exposed to 0.44 mM Cd2+ for 0 h, 24 h, and 48 h. Under Cd2+ exposure for 24 h, the plant presented a favorable photosynthesis by maintaining relatively higher antioxidant activity. Cd2+ exposure for 48 h accelerated membrane peroxidation, declined photosynthetic pigment content, and increased polyphenol oxidase activity, thus interfering with photosynthesis. The phenylpropane pathway served as a chemical rather than physical defense against Cd2+ in the plant leaves. A total of 20,998, 4743, and 4413 differentially expressed genes (DEGs) were identified in the groups of 0 h vs 24 h, 0 h vs 48 h, and 24 h vs 48 h, respectively. The primary metabolic pathways of the DEGs were mainly enriched in nitrogen metabolism, starch and sucrose metabolism, fructose and mannose metabolism, as well as pentose-phosphate pathway, contributing to a stable cell structure and function. Flavonoid biosynthesis directly or indirectly played an antioxidative role against Cd2+ in the leaves. Forty-nine transcription factor (TF) families were identified, and 8 TF families were shared among the three groups. The present study provides a theoretical foundation for investigating tolerance mechanisms of wetland plants to Cd stress in terms of secondary metabolism and transcriptional regulation.


Assuntos
Cádmio , Pontederiaceae , Antioxidantes/metabolismo , Biodegradação Ambiental , Cádmio/metabolismo , Cádmio/toxicidade , Humanos , Fotossíntese , Folhas de Planta/metabolismo , Pontederiaceae/metabolismo , Metabolismo Secundário
14.
World J Urol ; 40(4): 1043-1048, 2022 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-35061058

RESUMO

PURPOSE: To investigate the puncture accuracy and feasibility of contrast-enhanced ultrasound (CEUS) guided percutaneous nephrolithotomy (PCNL) in flank position for patients with no apparent hydronephrosis. METHODS: Between May 2018 and June 2020, 72 kidney stone patients with no or mild hydronephrosis were randomized into two groups: a CEUS-guided PCNL group and a conventional ultrasound (US)-guided group. Patients' demographics and perioperative outcomes were compared, including the success rate of puncture via calyceal fornix, the success rate of a single-needle puncture, puncture time, operative time, postoperative hemoglobin loss, stone-free rate, incidence of complications and postoperative stay. RESULTS: The success rate of puncture via calyceal fornix for CEUS-guided group was significantly higher than that for conventional US-guided group (86.1 vs. 47.2%, p = 0.002). Patients performed with CEUS-guided PCNL required shorter renal puncture time than those guided with conventional US (36.5 s vs. 61.0 s, p < 0.001). The median postoperative hemoglobin loss in the CEUS-guided group was significantly lower than that in conventional US-guided group (2.5 vs. 14.5 g/L, p < 0.01). There was no statistically significant difference in the success rate of a single-needle puncture, operative time, stone-free rate, incidence of complications and postoperative stay between the two groups. CONCLUSION: CEUS guidance facilitates identification of the renal calyx fornix, and benefits more precise renal puncture and less hemoglobin loss in PCNL. CEUS-guided PCNL in flank position is a feasible approach to the treatment of kidney stone patients with no apparent hydronephrosis. TRIAL REGISTRATION NUMBER: ChiCTR1800015417.


Assuntos
Hidronefrose , Cálculos Renais , Nefrolitotomia Percutânea , Nefrostomia Percutânea , Estudos de Viabilidade , Humanos , Hidronefrose/diagnóstico por imagem , Hidronefrose/cirurgia , Cálculos Renais/diagnóstico por imagem , Cálculos Renais/cirurgia , Resultado do Tratamento
15.
Environ Technol ; 43(20): 3121-3130, 2022 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-33843481

RESUMO

The cell membrane permeability, morphology, metabolomics, and gene expression of Microcystis aeruginosa under various concentrations of succinic acid (SA) were evaluated to clarify the mechanism of SA inhibition of M. aeruginosa. The results showed that SA caused intracellular protein and nucleic acid extravasation by increasing the cell membrane permeability. Scanning electron microscopy suggested that a high dose of SA (60 mg L-1) could damage the cell membrane and even cause lysis in some cells. Metabolomics result demonstrated that change in intracellular lipids content was the main reason for the increase of cell membrane permeability. In addition, SA could negatively affect amino acids metabolism, inhibit the biosynthesis of nucleotides, and interfere with the tricarboxylic acid (TCA) cycle of algal cells. Furthermore, SA also affected N assimilation and caused oxidative damage to Microcystis. In conclusion, SA inhibits the growth of M. aeruginosa through multisite action.


Assuntos
Microcystis , Expressão Gênica , Microcystis/fisiologia , Estresse Oxidativo , Ácido Succínico/farmacologia
16.
IEEE/ACM Trans Comput Biol Bioinform ; 19(6): 3404-3415, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-34780330

RESUMO

Sequence alignment is an essential step in computational genomics. More accurate and efficient sequence pre-alignment methods that run before conducting expensive computation for final verification are still urgently needed. In this article, we propose a more accurate and efficient pre-alignment algorithm for sequence alignment, called DiagAF. Firstly, DiagAF uses a new lower bound of edit distance based on shift hamming masks. The new lower bound makes use of fewer shift hamming masks comparing with state-of-the-art algorithms such as SHD and MAGNET. Moreover, it takes account the information of edit distance path exchanging on shift hamming masks. Secondly, DiagAF can deal with alignments of sequence pairs with not equal length, rather than state-of-the-art methods just for equal length. Thirdly, DiagAF can align sequences with early termination for true alignments. In the experiment, we compared DiagAF with state-of-the-art methods. DiagAF can achieve a much smaller error rate than them, meanwhile use less time than them. We believe that DiagAF algorithm can further improve the performance of state-of-the-art sequence alignment softwares. The source codes of DiagAF can be downloaded from web site https://github.com/BioLab-cz/DiagAF.


Assuntos
Algoritmos , Software , Alinhamento de Sequência , Genômica
17.
Allergy Asthma Clin Immunol ; 17(1): 135, 2021 Dec 25.
Artigo em Inglês | MEDLINE | ID: mdl-34953489

RESUMO

BACKGROUND: The relationship between allergies and sinusitis, though extensively studied, remains poorly defined. While several studies proposed a cause-and-effect relationship between allergy and chronic sinusitis, several others reported the lack of any existing association. This study aimed to investigate the relationship between allergy and sinusitis. METHODS: We conducted a cross-sectional study using a representative sample of the US population from the National Health and Nutrition Examination Survey 2005‒2006 (n = 7244). A self-reported allergy questionnaire and total and allergen-specific IgE levels were used for analysis. Participants were divided into positive and negative allergy symptoms groups (PAS, NAS, respectively) to eliminate the influence of allergy symptoms on the apparent incidence of sinusitis. Pearson's chi-square test and the linear regression analysis using Durbin Watson test were used for statistical analysis. RESULTS: Sinusitis incidence in the PAS group (22.4%; 521/2327) was significantly higher than that in the NAS group (7.1%; 348/4917) [odds ratios (OR) = 3.788, 95% confidence interval (CI) 3.272‒4.384, P < 0.001]. sinusitis incidence in non-sensitized and sensitized groups was not statistically different. After controlling for allergy symptoms, there was a negative correlation between sensitization status and the occurrence of sinusitis in the PAS group (OR = 1.407, 95% CI 1.156‒1.711, P < 0.01). Increase in serum total IgE levels correlated with decrease in incidence of sinusitis in both PAS and NAS groups. sinusitis incidence was significantly reduced in the PAS group in participants sensitized to allergens such as cockroaches, ragweed, ryegrass, Bermuda grass, oak, birch, and thistle. CONCLUSION: Allergy is related to sinusitis incidence. It is likely that sensitization status could reduce the incidence of sinusitis, albeit in an antigen-specific manner.

18.
Foods ; 10(7)2021 Jun 22.
Artigo em Inglês | MEDLINE | ID: mdl-34206242

RESUMO

Red jujube fruits and bamboo shoots are rich in many nutrients and have the advantage of high yield in China. However, the storage of fresh fruits is difficult, and there are no fermented products using both as raw materials. In order to develop the two raw materials into novel products and improve their nutritional value, this study reports the production and characterization of a beverage via fermentation of red jujube fruits and bamboo shoots with Lactiplantibacillus plantarum. L. plantarum TUST-232 was selected as the starter from several different strains by comparing pH value and the number of viable cells, which reached 8.91 log CFU/mL in the beverage fermented for 14 h at 37 °C with 0.3% inoculation. After fermentation, the beverage showed improvement in the contents of several nutrients and antioxidant indices, with a decrease of 44.10% in sucrose content, along with increases of 11.09%, 12.30%, and 59.80% in total phenolic content, total antioxidant capacity, and superoxide anion scavenging ability, respectively. These results indicate that L. plantarum fermentation of red jujube fruits and bamboo shoots could be an effective way to develop a new beverage with high nutritional value, high antioxidant capacity, and high dietary fiber content. This research provided experimental support for the development of new fermentation products with the functions of improving health and body functions.

19.
Environ Sci Pollut Res Int ; 28(41): 58470-58479, 2021 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-34114144

RESUMO

To elucidate the mechanism of succinic acid (SA) inhibition of Microcystis aeruginosa, the chlorophyll fluorescence transients, photosynthesis, photosynthetic electron transport activity, and gene expression of M. aeruginosa were evaluated under various doses of SA. The results demonstrated that, after treatment with 60 mg L-1 SA for 1 h, the chlorophyll fluorescence transients and related parameters changed significantly, indicating that the function and structure of photosynthetic apparatuses of Microcystis were seriously damaged. The initial quantum efficiency α, maximum net photosynthetic rate Pnmax, dark respiration rate Rd, and gross photosynthetic rate decreased to 57%, 49%, 49%, and 46%, respectively, relative to the control. Furthermore, photosystem II (PSII) activity (H2O→p-BQ) and the electron transport activity of H2O→MV and DPC→MV significantly decreased. Real-time PCR analysis revealed that, following incubation with 60 mg L-1 SA for 24 h, the expression level of core protein genes (psbA, psaB, psbD, and psbO) of the photosynthesis centers photosystem I (PSI) and PSII decreased significantly. However, the transcription of gene nblA encoding phycobilisome degradation protein was elevated. The downregulation of the rbcL gene, which encodes the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco), resulted in the suppression of CO2 fixation and assimilation. High concentration (60 mg L-1) of SA resulted in damage to oxygen-evolving complex (OEC) and reaction center of PSII, blocking photosynthetic electron transport, thereby lowering the rate photosynthesis and inhibiting the growth of Microcystis. We concluded that inhibition of photosynthesis is an important mechanism of SA inhibition in M. aeruginosa.


Assuntos
Microcystis , Complexo de Proteína do Fotossistema II , Clorofila , Transporte de Elétrons , Microcystis/metabolismo , Oxigênio , Fotossíntese , Complexo de Proteína do Fotossistema II/metabolismo , Ácido Succínico
20.
Ying Yong Sheng Tai Xue Bao ; 32(4): 1383-1392, 2021 Apr.
Artigo em Chinês | MEDLINE | ID: mdl-33899407

RESUMO

In this study, we collected soil samples from four different land use types (forest land, shrub land, grassland and abandoned land) in Huajiang valley of Guizhou Province, a typical karst rocky desertification area in Southwest China. Correlation analysis and redundancy analysis were used to examine the distribution of available nitrogen (N) and available phosphorus (P) in diffe-rent soil layers from 0 to 30 cm and the relationships between soil environmental factors (soil physical indexes, organic carbon components, electrochemical properties, metal oxides and enzyme activities) and the contents of available N and available P. The results showed that the concentrations of soil total N, total P, available N, available P decreased significantly with the increases of soil depth. The concentrations of soil available N and available P in forest land and shrub land were significantly higher than those in grassland and abandoned land, which were significantly positively correlated with soil organic carbon composition, enzyme activity, surface electrochemical properties and amorphous mental oxide while significantly negatively correlated with soil silt and free metal oxides. Results of the redundancy analysis showed that the environmental factors affecting soil availa-ble N and available P of the four land use types were basically the same, with soil particulate organic carbon, total organic carbon and soil specific surface area playing a key role in driving the variations of soil available N and available P. The efficient explanation of variation to soil available N and P contents by soil particulate organic carbon might be due to the reduction of soil nutrient loss by the storage of N and P in organic matter. Except for high enzyme activity and electrochemical properties of forest land and shrub land, the higher soil available N and available P concentrations compared with grassland and abandoned land might be resulted from the inhibition of free iron and aluminum oxides information by higher soil organic carbon content and the reduced adsorption and fixation of N and P by iron and aluminum oxides.


Assuntos
Nitrogênio , Solo , Carbono/análise , China , Conservação dos Recursos Naturais , Florestas , Nitrogênio/análise , Fósforo
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA